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CIS or PAYE: what actually changes when you go self-employed on site

What CIS is, what you lose and gain against being on the books, how much tax you really pay, and the list of things you now have to do yourself. Or WhatsApp me and I'll do the list.

Not quite. Self-employed is what you are, CIS is just how HMRC take the tax off you. If you're CIS you're self-employed, no question, but you can be self-employed and not be CIS, doing kitchens straight for homeowners say. It only kicks in when a contractor's paying you for construction work.

PAYE or CIS — what actually changes

Here's the two side by side. Nothing on the CIS side is a trick, it's just that every one of them is now your job rather than the firm's.

PAYE (on the books)CIS (self-employed)
Who works out your taxThe firm, every payslipYou, once a year on a tax return
What comes off before you're paidTax + National Insurance on all of it20% off the labour only (30% if you're not registered)
Holiday pay5.6 weeks a year, paidNone — a day off is a day unpaid
Sick payStatutory sick pay at leastNone
PensionFirm pays in as well as youOnly what you put in yourself
Van, fuel, tools, phoneYours to pay, not claimableClaimable against your profit
Tax returnUsually noneSelf Assessment every year, and quarterly MTD updates once you're over the threshold
Refund in AprilRareUsual — the 20% is taken on turnover, the bill is on profit
Who pays the employer's NIThe firm (15% on top of your pay)Nobody — that's the saving the firm's after

So is it better? Depends what you're getting for it. Being CIS costs you the holiday pay, the sick pay and the pension, and the firm saves itself 15% employer's National Insurance on every pound they pay you, which is why so many of them push it. If the day rate's the same as your old wage, you've been given a pay cut with extra paperwork. If it's a good chunk higher and you're genuinely picking your own jobs, it can work out really well, you're claiming your van, your tools and your fuel and there's usually a refund in April. One thing though. It's not the firm's choice or yours, it's a matter of fact. If you turn up when they say, do what they say, on their tools, with no say in it, HMRC would call you an employee whatever the invoice says, and there's a tool on gov.uk that gives you their answer in ten minutes.

HMRC's own checker: Check employment status for tax (CEST) — anonymous, ten minutes, and HMRC stand by the answer. The rules in plain English: gov.uk employment status.

How much tax do you actually pay on CIS?

The 20% that comes off isn't your tax bill, it's a deposit against it. Your actual bill gets worked out on your profit after your expenses and your tax-free allowance, and it's nearly always less than what's been taken. Here's a typical first year.

A first year on CIS, registered at 20%
Labour invoiced over the year£35,000
Deducted by contractors (20%)£7,000
Expenses — van, fuel, tools, phone, insurance−£5,000
Profit£30,000
Tax-free personal allowance−£12,570
Income tax — 20% of £17,430£3,486
Class 4 National Insurance — 6% of £17,430£1,046
Total bill£4,532
Already paid through CIS£7,000
Refund£2,468

HMRC's rates, the same for 2025/26 and 2026/27. No Class 2 National Insurance to pay on a profit like this. Same year unregistered at 30%: £10,500 taken, £5,968 back — eventually. Run your own numbers →

That's the whole reason subbies get refunds. The 20% is taken off your turnover, before a single expense has come off, and the bill's worked out on what's left after them. Put your own numbers in the refund calculator and you'll see roughly where you'd land, and if you're on 30% because you haven't registered, that gap is bigger, but it's also money you're not seeing till next April.

What you now have to do yourself

On the books, this all happened somewhere in the office without you knowing. Now it's you. Not hard, but it has to be done, and in this order.

  1. Register as self-employed and for CIS — one form does both if you tick "working as a subcontractor". You need the UTR before any contractor can verify you at 20%. The steps, with the gov.uk links.
  2. Invoice properly. Labour and materials on separate lines, every time — CIS only comes off the labour, and a one-line invoice gets 20% taken off the lot. See the difference on the calculator.
  3. Keep every payment and deduction statement. The contractor has to give you one each month. They're the proof of what's been taken; without them the refund is a fight. What one looks like and what to check.
  4. Keep your receipts and your mileage. Van, fuel, tools, phone, PPE, insurance, the lot — every one lowers the bill and lifts the refund.
  5. Self Assessment by 31 January. The tax year ends 5 April; the online return and any tax owed are due the following 31 January. That's when the refund is claimed too — file in April, get it in weeks, not the January after.
  6. Making Tax Digital, once you're big enough. Over £50,000 a year: digital records and a quarterly update to HMRC since April 2026. Over £30,000 joins April 2027, over £20,000 April 2028. What MTD means for the trades.

Going from PAYE to CIS part-way through the year

You don't have to wait for April, most people switch mid-year and it's fine. Your P45 from the firm shows what you earned and what tax you've already paid through PAYE, and that goes on the same tax return as your CIS months. Both get added up, both lots of tax count, and the bit that's usually a nice surprise is that your tax-free allowance was probably only half used up on the payroll, so the CIS deductions have often covered more than they needed to.

Or send me a WhatsApp and I'll do the list with you

Registering, the invoices, the statements, the return in January, all of it. You photograph what the contractor gives you and send it to me, I keep it straight, and by April your refund's already worked out. First month's free on the £149 plan, no card, nothing to cancel, and after that it's from £69 a month. If it's not for you after the month, that's cool.

WhatsApp me — I'll reply today See what your refund might be

Common questions

Is it better to be paid CIS or PAYE?

Financially, only if the day rate is a fair bit higher than the wage it replaces, because you're giving up holiday pay, sick pay and the employer's pension contribution, and the firm's saving 15% National Insurance on you. Where CIS wins is expenses, you claim the van, fuel, tools and so on against your profit, and there's usually a refund in April. If the rate's the same and the work's the same, PAYE was better and you've been moved for the firm's benefit, not yours.

Is CIS the same as self-employed?

No. Self-employed is your status, CIS is a tax deduction scheme that applies to self-employed people doing construction work for a contractor. Everyone on CIS is self-employed (or a limited company), but not everyone self-employed is on CIS. A plumber doing jobs for homeowners is self-employed and CIS never comes into it, the same plumber doing a week for a building firm is CIS for that week.

How much tax do you pay as CIS?

The 20% is a payment on account, not the bill. Your real tax is 20% income tax on profit above the £12,570 allowance, plus 6% Class 4 National Insurance on the same band, and profit means what's left after expenses. On £35,000 invoiced with £5,000 of expenses that's about £4,500 of tax against £7,000 already deducted, so around £2,500 comes back. Over £50,270 of profit it's 40% and 2% on the extra.

What does CIS stand for?

Construction Industry Scheme. It's HMRC's system for collecting tax from self-employed people in construction at source, so the contractor takes 20% (or 30% if you're not registered) off the labour part of what they pay you and sends it to HMRC in your name. In your accounts it shows up as tax already paid, and it's set against your bill when your return goes in.

Can I switch from PAYE to CIS part-way through the tax year?

Yes, and it's common. Keep the P45 from the firm, it shows your pay and the tax already taken through PAYE. When your Self Assessment goes in it has an employment section for those months and a self-employment section for the CIS months, and the two lots of tax both count against one bill. Register as self-employed straight away, don't wait for April, because you need the UTR before a contractor can verify you at 20%.

Next: register for CIS · your first CIS statement · what your refund might be · CIS start to finish · what it costs from £69 a month

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